Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLVTATTLTAGIGTALVGQAHHADAAENYTNYNNYNYNTTQTTTTTTTTTTTSSISHSGNLYTAGQCTWYVYDKVGG---EIGSTWGNANNWAAAAQ--------GAGFTV-----NHTPSKGAILQSSE----GPFGHVAYVESVNSDGSVTISEMNYSGGPFSVSSRTISASEAGNYNYIHI
2IO8 Chain:A ((51-155))
------------------------------------------------------------EYMGHKWQCVEFARRFLFLNYGVVFTDVGMAWEIFSLRFLREVVNDNILPLQAFPNGSPRAPVAGALLIWDKGGEFKDTGHVAIITQLHG-NKVRIAEQNVIH-----------------------
General information:
TITO was launched using:
RESULT:
Template:
2IO8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -28816 for 502 contacts (-57.4/contact) +
2D Compatibility (PS) -8823 + (NN) -4207 + (LL) 4160
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -42486.0 ( -84.63 by residue)
QMean score : 0.377
(partial model without unconserved sides chains):
PDB file :
Tito_2IO8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2IO8-query.scw
PDB file :
Tito_Scwrl_2IO8.pdb
: