Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MHPRKTLQLPLILKIILNLALIGIVIIVLTHTEFQLNAGDSNVFLLNWDIRGLTS---YIFSFLILVALVSKLILIFITRRQRTS---------------
2COV Chain:D ((378-469))
--PPENCQDD------FNFNYVSDQEIEVYHVDKGWSAGWNYVCLNDYCLPGNKSNGAFRKTFNAVLGQDYKLTFKVEDRYGQGQQILDRNITFTTQVCN
General information:
TITO was launched using:
RESULT:
Template:
2COV.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -66032 for 433 contacts (-152.5/contact) +
2D Compatibility (PS) -8051 + (NN) -830 + (LL) 1280
1D Compatibility (HY) -1200 + (ID) 750
Total energy: -75583.0 ( -174.56 by residue)
QMean score : 0.322
(partial model without unconserved sides chains):
PDB file :
Tito_2COV.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2COV-query.scw
PDB file :
Tito_Scwrl_2COV.pdb
: