Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MIELWPAIDLIGSTSVRLTEGKYDSEEKMSRSAEESIAYYSQFECVNRIHIVDLIGAKAQYAREFDYIKSLRRLTTKDIEVGGGIRTKSQIMDYFAAGINYCIVGTKGIQDTDWLKEMAHTFPGR-----IYLSVDAYG-EDIKVNGWEEDTELNLFSFVRQLSDIPLGGIIYTDIAKDGKMSGPNFELTGQLV-KATTIPVIASGGIRHQQDIQRLASLNVHAAIIGKAAHQASFWEGLE
5A5W Chain:A ((4-233))
-----PALNLIDGTVVRLHQGDYARQRDYGNDPLPRLQDYAA-QGAGVLHLVDLTGAKDPAKRQIPLIKTLVAGVNVPVQVGGGVRTEEDVAALLKAGVARVVIGSTAVKSPDVVKGWFERFGAQALVLALDVRIDEHGTKQVAVSGWQENSGVSLEQLVETYLPVGLKHVLCTDISRAGTLAGSNVSLYEEVCARYPQIAFQSSGGIGDIDDIAALRGTGVRGVIVGRALLEGKF-----
General information:
TITO was launched using:
RESULT:
Template:
5A5W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -95526 for 1809 contacts (-52.8/contact) +
2D Compatibility (PS) -24106 + (NN) -9039 + (LL) 1348
1D Compatibility (HY) -20000 + (ID) 3150
Total energy: -150473.0 ( -83.18 by residue)
QMean score : 0.473
(partial model without unconserved sides chains):
PDB file :
Tito_5A5W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5A5W-query.scw
PDB file :
Tito_Scwrl_5A5W.pdb
: