Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDKKTIYFICTGNSCRSQMAEGWGKEILGEGWNVYSAGIETHGVNPKAIEAMKEVDIDISNHTSDLIDNDILKQSDLVVTLCSDADNNCPILPPNVKKEHWGFDDPAGKE------WSEFQRVRDEIKLAIEKFKLR
1Z2D Chain:A ((1-134))
MENKIIYFLCTGNSCRSQMAEGWAKQYLGDEWKVYSAGIEAHGLNPNAVKAMKEVGIDISNQTSDIIDSDILNNADLVVTLCGDAADKCPMTPPHVKREHWGFDDPARAQGTEEEKWAFFQRVRDEIGNRLKEF---
General information:
TITO was launched using:
RESULT:
Template:
1Z2D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -43491 for 1055 contacts (-41.2/contact) +
2D Compatibility (PS) -14134 + (NN) -8515 + (LL) 340
1D Compatibility (HY) -15600 + (ID) 4350
Total energy: -85750.0 ( -81.28 by residue)
QMean score : 0.598
(partial model without unconserved sides chains):
PDB file :
Tito_1Z2D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Z2D-query.scw
PDB file :
Tito_Scwrl_1Z2D.pdb
: