Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKKFLSLTLGSLLVSALSAEDNGFFVSAGYQIGESAQMVKNTKGIQDLSDSYERLNNLLTNYSVLNALIRQSADPNAINNARGNLNASAKNLINDKKNSPAYQAVLLALNAAAGLWQVMSYAISPCGPGKDTSKNGGVQTFHNTPSNQWGGTTITCGTTGYEPGPYSILSTENYAKINKAYQIIQKAFGSSGKDIPALSDTNTELKFTINKNNGNTNTNNNGEEIVTKNNAQVLLEQASTIITTLNSACPWINNGGAGGASSGSLWEGIYLKGDGSACGIFKNEISAIQDMIKNAAIAVEQSKIVAANAQNQRNLDTGKTFNPYKDANFAQSMFANAKAQAEILNRAQAVVKDFERIPAEFVKDSLGVCHEVQNGHLRGTPSGTVTDNTWGAGCAYVGETVTNLKDSIAHFGDQAERIHNARNLAYTLANFSSQYQKLGEHYDSITAAISSLPDAQSLQNVVSKKTNPNSPQGIQDNYYIDSNIHSQVQSRSQELGSNPFRRAGLIAASTTNNGAMNGIGFQVGYKQFFGKNKRWGARYYGFVDYNHTYNKSQFFNASSDVWTYGVGSDLLVNFINDKATKHNKISFGAFGGIALAGTSWLNSQYVNLANVNNYYKAKINTANFQFLFNLGLRMNLARKKHRATDNAAQHGIELGTKIPTINTNYY-SLL----GTTLQYRRLYSVYLNYVFAY |
2F1V Chain:A ((35-191)) | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------NNTQLGLTFTY--MAT--DNIGVELLAATPF-RHKIGTRATGDIATVHHLPPTLMAQWYFGDA------SSKFRPYVGAGINYTTFFDNGFNDHG-KEAGLSDLSLKDSWGAAGQVGVDYLIN----------RDWLVNMSVWYMDIDTTANYKLGGAQQHDSVRL-DPWVFMFSAGYRF |
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General information:
TITO was launched using:
| RESULT:
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Template: 2F1V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -17803 for 1077 contacts (-16.5/contact) +
2D Compatibility (PS) -15844 + (NN) 479 + (LL) 26332
1D Compatibility (HY) -4000 + (ID) 600
Total energy: -11436.0 ( -10.62 by residue)
QMean score : -0.048
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