Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MNEIILITGAYGMVGQNTALYFKKNK----PDVTLLTPKKSELYLLDKDNVQAYLKEYKPTGIIHCAGRVGGIVANMNDLSTYMVENLLMGLYLFSSALDLGVKKAINLASSCAYPKYAPNPLKESDLLNGSLEPTNEGYALAKLSVMKYCEYVSAEKGVFYKTLVPCNLYGEFDKFEEKIAHMIPGLIARMHTAKLKNEKNFAMWGDGTARREYLNAKDLAR-FIALAYENIAQMPSVMNVGSGVDYSIEEYYEKVAQVLDYKGVFVKDSSKPVGMQQKLMDISKQKALKWELEI-PLEQGIKEAYEYYLKLLEV |
4B8Z Chain:A ((10-312)) | ----ILVTGGSGLVGKAIQKVVADGAGLPGEDWVFVSSKDADL--TDTAQTRALFEKVQPTHVIHLAAMVGGLFRNIKYNLDFWRKNVHMNDNVLHSAFEVGARKVVSCLSTCIFPDKTTYPIDETMIHNGPPHNSNFGYSYAKRMIDVQNRAYFQQYGCTFTAVIPTNVFGPHDNFNIEDGHVLPGLIHKVHLAKSSGSA-LTVWGTGNPRRQFIYSLDLAQLFIWVLREYNEVEPIILSVGEEDEVSIKEAAEAVVEAMDFHGEVTFDTTKSDGQFKKTASNSKLRTYLPDFRFTPFKQAVKETCAWFTDN--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4B8Z.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -137585 for 2511 contacts (-54.8/contact) +
2D Compatibility (PS) -31847 + (NN) -12278 + (LL) 1040
1D Compatibility (HY) -15600 + (ID) 4200
Total energy: -200470.0 ( -79.84 by residue)
QMean score : 0.509
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