Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLNTTQKSLLVFMGVFFLIFGVDQAIKHAILEGFHYESLVIDIVLVFNKGVAFSLLSFLEGGLKYLQILLILG-----LFIFLMRQKELFKSHAIEFGMVFGAGVSNVLDRFVHGGVVDYVYYHYGFDFAIFNFADVMIDVGVGVLLLRQFFFKQKQNKIKGIITLFK
2KJF Chain:A ((1-60))
-----------------------------------------LVAYGIAQGTAEKVVSLINAGLTVGSIISILGGVTVGLSGVFTAVKAAIAKQGIKKAIQL-------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2KJF.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -55568 for 347 contacts (-160.1/contact) +
2D Compatibility (PS) -5863 + (NN) -2075 + (LL) 9148
1D Compatibility (HY) -3200 + (ID) 600
Total energy: -58158.0 ( -167.60 by residue)
QMean score : 0.380
(partial model without unconserved sides chains):
PDB file :
Tito_2KJF.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2KJF-query.scw
PDB file :
Tito_Scwrl_2KJF.pdb
: