Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKMNVESFNLDHTKVKAPYVRIADRKKGVNGDLIVKYDVRFKQPNRDHMDMPSLHSLEHLVAEIIRNHAN----YVVDWSPMGCQTGFYLTVLNHDNYTEILEVLEKTMQDVLKAKE---VPASNEKQCGWAANHTLEGAQNLARAFLDKRAEWSEVGV
1J6W Chain:A ((4-144))
----LDSFKVDHTKMNAPAVRIAKTMLTPKGDNITVFDLRFCIPNKEILSPKGIHTLEHLFAGFMRDHLNGDSIEIIDISPMGCRTGFYMSLIGTPNEQKVSEAWLASMQDVLGVQDQASIPELNIYQCGSYTEHSLEDAHEIAKNVIARGIGVNKNED
General information:
TITO was launched using:
RESULT:
Template:
1J6W.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -54184 for 948 contacts (-57.2/contact) +
2D Compatibility (PS) -13531 + (NN) -700 + (LL) 400
1D Compatibility (HY) -10400 + (ID) 2800
Total energy: -81215.0 ( -85.67 by residue)
QMean score : 0.526
(partial model without unconserved sides chains):
PDB file :
Tito_1J6W.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1J6W-query.scw
PDB file :
Tito_Scwrl_1J6W.pdb
: