Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MELGNKNIKPGRKRVAVDELKRNFSVTFYLSKEEHDVLRRLADEEVE-SVNSFVKRHILKTIIYKKGTNQDSSINCDSSSRL
1Y9B Chain:A ((3-45))
--------------------TTLPRITARVDVDTQDLLAKAAALAGMSSINSFVLNAAIEKAKQVIEREQALKLSQADAVLL
General information:
TITO was launched using:
RESULT:
Template:
1Y9B.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2702 for 174 contacts (-15.5/contact) +
2D Compatibility (PS) -4415 + (NN) -1887 + (LL) 1172
1D Compatibility (HY) 400 + (ID) 300
Total energy: -7732.0 ( -44.44 by residue)
QMean score : 0.374
(partial model without unconserved sides chains):
PDB file :
Tito_1Y9B.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y9B-query.scw
PDB file :
Tito_Scwrl_1Y9B.pdb
: