Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLDQLEVSHDADSLCVVIEISKHSN-IKYELDKESGALMVDRVLYGAQNYPANYGFVPNTLGSDGDPVDALVLSDVAFQAGSVVKARLVGVLNMEDESGMDEKLLALPIDKIDPTHSYVKDIDDLSKHTLDKIKHFFETYKDLEPNKWVKVKGFENKESAIKVLEKAIKAYQG
3EIY Chain:A ((39-195))
----------------VIIEIPAQSEPVKYEADKALGLLVVDRFIGTGMRYPVNYGFIPQTLSGDGDPVDVLVITPFPLLAGSVVRARALGMLKMTDESGVDAKLVAVPHDKVCPMTANLKSIDDVPAYLKDQIKHFFEQYKALEKGKWVKVEGWDGIDAAHKEITDGVANFKK
General information:
TITO was launched using:
RESULT:
Template:
3EIY.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -58751 for 1168 contacts (-50.3/contact) +
2D Compatibility (PS) -16452 + (NN) -3125 + (LL) 1032
1D Compatibility (HY) -16000 + (ID) 3850
Total energy: -97146.0 ( -83.17 by residue)
QMean score : 0.458
(partial model without unconserved sides chains):
PDB file :
Tito_3EIY.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3EIY-query.scw
PDB file :
Tito_Scwrl_3EIY.pdb
: