Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MLENRVKTKQIFIGGVAIGGDAPISTQSMTFSKTADIESTKNQIDRFKLAGADLVRVAVSNEKDALALKELKKV-----SPLPLIADIHFHYKFALIA----AQSVDAIRINPGNIG---SKDK-----IKAVVDACKEKNIPIRIGVNAGSLEKQF-----DQKYG-PTPK--------GMVESAL--YNAKLLEDLDFTDFKISLKASDVVRTIEAYRMLRPLVIYPFHLGVTEAGNLFSSSIKSAMALGGLLMEGIGDTMRVSITGELEN----EIKVARAILRHSGRLKEGINWISCPTCGRIEANLV-DMASKVEKRLS------HIKTP----LDISVMGCVVNALGEAKHADMAIAFGNRS----GLIIKEGKVIHKLAEKDLFETFVIEVENLAKEREKSLKD |
2Y0F Chain:A ((5-401)) | ----RRPTPTVYVGRVPIGGAHPIAVQSMTNTPTRDVEATTAQVLELHRAGSEIVRLTVNDEEAAKAVPEIKRRLLAEGVEVPLVGDFHFNGHLLLRKYPKMAEALDKFRINPGTLGRGRHKDEHFAEMIRIAMDLGK----PVRIGANWGSLDPALLTELMDRNASRPEPKSAHEVVLEALVESAVRAYEAALEMGLGEDKLVLSAKVSKARDLVWVYRELARRTQAPLHLGLTEAGMGVKGIVASAAALAPLLLEGIGDTIRVSLTPSPKEPRTKEVEVAQEILQALGLRAFAPEVTSCPGCGRTTSTFFQELAEEVSRRLKERLPEWRARYPGVEELKVAVMGCVVNGPGESKHAHIGISLPGAGEEPKAPVYADGKLLTILKGEGIAEEFLRLVEDYVKTRFAPKA- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2Y0F.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -153763 for 2687 contacts (-57.2/contact) +
2D Compatibility (PS) -37746 + (NN) -19107 + (LL) 804
1D Compatibility (HY) -22400 + (ID) 6850
Total energy: -239062.0 ( -88.97 by residue)
QMean score : 0.480
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