Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSDFKVPPKAKGFKRLFKALFYSKDGLKCAWAEESAFRQIVILALFCIVLASYLTKDFLEWGLLILPCFLSVVIELINSSIEKAVDFTGTEFHPLAKKAKDMASSAQLIGLIFWAFIWGRYLLTLYFN
4CJZ Chain:A ((16-121))
------------FTRIIKAAGYSWKGLRAAWINEAAFRQEGVAVLLAVVIACWLDVDACTRVLLISSVMLVMIVELLNSAIEAVVDRIGSEYHELSGRAKDLGSAAVLIAIIDAVITWCILLWSHF--
General information:
TITO was launched using:
RESULT:
Template:
4CJZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -52230 for 618 contacts (-84.5/contact) +
2D Compatibility (PS) -11137 + (NN) -6488 + (LL) 240
1D Compatibility (HY) -9600 + (ID) 2250
Total energy: -81465.0 ( -131.82 by residue)
QMean score : 0.292
(partial model without unconserved sides chains):
PDB file :
Tito_4CJZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4CJZ-query.scw
PDB file :
Tito_Scwrl_4CJZ.pdb
: