Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDFKNKKWLFLAPLAGYTDLPFRSVVKK--FGVDVTTSEMVSSHSLVYAFDKTSKMLEKSPLEDHFMAQISGSKESVVKEAVEKINALDHVSGIDFNCGCPAPKVANHGNGSGLLKDLNHLVEILKVIRENTNKKITSVKVRLGFE-KKIPKEIAH---ALNDAPVDYVVVHGRT----------------RSDRYQKDKIDYESIALMKKILKKPVIANGEIDSVKKAFEVLQITQADGLMIGRATLRAPWIFWQIRNNTTELPAVVKKDLVLEHFDKMVEFYGDRGVIMFRKNLHAYAKGEMQASAFRNCVNTLTEIKSMRESIEEFFNQEMLQSEVPLWVELNQKSV |
| 3B0V Chain:C ((27-267)) | --------LSVAPMVDRTDRHFRFLVRQVSLGVRLYTEMTVDQAVL---RGNRERLLAFRPEEHPIALQLAGSDPKSLAEAARIGEAFGY-DEINLNLGCPSEKAQEGGYGACLLLDLARVREILKAMGEAVRVPVT-VKMRLGLEGKETYRGLAQSVEAMAEAGVKVFVVHARSALLALSTKANREIPPLRHDWVHRLKGDFPQLTF---------VTNGGIRSLEEA--LFHLKRVDGVMLGRAVYEDPFVLEEADRRVFGLPRRPSRLEVARRMRAYLEEEVLKGTPPWAVLRHMLNLFRGRPKGRLWRRLLSEGRSLQALDRALRLMEEE---------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3B0V.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -85097 for 1803 contacts (-47.2/contact) +
2D Compatibility (PS) -22953 + (NN) -7964 + (LL) 4048
1D Compatibility (HY) -16400 + (ID) 3650
Total energy: -132016.0 ( -73.22 by residue)
QMean score : 0.353
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