Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKIFLSCKSLLIQRSLE-FYLSDCLSPVEV-----CDLVLSDDEKLETNKPLCFIEERLRKPFTKQSVKEDIKNFYRALKISEKPCEEIQFSKEQKIKQLLEEYTHKLCQIISQ
5CAW Chain:C ((211-256))
-RVQCSCGYVFCGKCLEGFHLGECLNPTDVPFLSQ---PL-DPEKLEKARWDEASSTVIKVLTKPCPKCRTSTERAGGCMHMICTRANCGFHWCWVCQGPWERDCMASHWFG--
General information:
TITO was launched using:
RESULT:
Template:
5CAW.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -13071 for 141 contacts (-92.7/contact) +
2D Compatibility (PS) -3481 + (NN) 1293 + (LL) 308
1D Compatibility (HY) -4000 + (ID) 800
Total energy: -19751.0 ( -140.08 by residue)
QMean score : 0.166
(partial model without unconserved sides chains):
PDB file :
Tito_5CAW.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-5CAW-query.scw
PDB file :
Tito_Scwrl_5CAW.pdb
: