Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MKKISCLLLVISLFGGFLNASSLYEKLVNKETISVGTEGIYPPFTYHDKEGKLTGYDVEVARELAKEL-GVKIKFHETSWDIMLTGLKSGRFDMVANQVSLTTKKRQAAFDKSLPYSYSGTIMLVRKDENRIKDIRDIKG--------------LKAANTLSSTYGEIAFKYDAQIVSVDSMAQALLLVAQKRADLTLNSSLAILNYLNTHKNSPFKIAWESKEKDGGASFVINKHQEKALELINQAMRRLINKGVLKRLGEQFFGKDVSQP |
4GVO Chain:A ((9-240)) | ------------------------------QTITVGTGTQFPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQMEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLKKINEEQGNNFEIA--YEGQ-GSNDTANQ----LKTGRADATISTPFAV-DFQNKTSAIKEKVVGDVLS-NAKVYFMLGKDETKLSKKVDEALQSIIDDGTLKKLSEKWLGADYSKE |
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General information:
TITO was launched using:
| RESULT:
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Template: 4GVO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -64770 for 1621 contacts (-40.0/contact) +
2D Compatibility (PS) -23370 + (NN) -11091 + (LL) 3844
1D Compatibility (HY) -12400 + (ID) 3350
Total energy: -111137.0 ( -68.56 by residue)
QMean score : 0.458
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