Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MPKTETYPRLLADIGGTNARFGLEVAP-RQ--IE---CVEVLRCEDFESLSDAVRFYLSKCKESLKLHPIYGSFAVATPIMGDFVQMTNNHWTFSIET-TRQCLNLKKLLVINDFVAQAYAISAMQENDLAQIGGIKCEINAPKAILGPGTGLGVSTLIQNSDGSLKVLPGEGGHVSFAPFDDLEILVWQYARSKFNHVSAERFLSGSGLVLIYEALSKRKGLEKVAKLSKAELTPQIISERALNGDY-PICRLTLDTFCSMLGTLAADVALTLGA-RGGVYLCGGIIPRF-IDYFKTSPFRARFETKGRMGAFLASIPVHVVMKKTPGLDGAGIALENYLLHDRI |
| 3VPZ Chain:A ((7-328)) | ----QFDPILVADIGGTNARFALITAFDAAKNEFVIEYNHTFPSADFGSLQNATRHYLSTVPHI---KPVRACLAVAGPIKAGQVHLTNLGWHFSVSEFKQAFSFL-QLEVINDFAAFAYAAPYLDSNQNVVIKAGQADENSNIAVMGPGTGFGAACLVRTA-QSSAVLSSEGGHISLAAVTDLDAKLLIELRKEHPHVSLETVFSGPGIAHLYKAMAAVNGIT------AKHLDAAQISNLAN-TGECEVCDATLNQFCDWLGSAAGDLALAYGALG-GLFIGGGILPRMQSRLLES-RFVERFSQKGIMSQYNGQVPVTLVTQDNIPLIGAAACLHNS------ |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3VPZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -238113 for 2654 contacts (-89.7/contact) +
2D Compatibility (PS) -32677 + (NN) -3288 + (LL) 1544
1D Compatibility (HY) -17200 + (ID) 5800
Total energy: -295534.0 ( -111.35 by residue)
QMean score : 0.419
|
|
|