Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MDQEILDVLIVGAGPGGIATVVECEIAGVKKVLLCEKTESHSG------------------MLE---KFYKAGKRIDKDYKKQVVELKGHIPFKDSFKEETLENFT----NLLKEHRITPSYKTDIESVKK--EGELFKITTT--SNTTYHAKFVVVAIGKMGQPNRPTTYKIPVALSKQVVFSINDCKENE----KTLVIGGGNSAVEYAIALCKTTP--TTLNYRKKEFSRINEDNAKNLQEVLDNNTLKSKLGVDIESLEEDNTQIKVNFTD---NTSESFDRLLYAIGGSTPLE---FFKRCSLELDPSTNIPVVKENLESNNIPNLFIVGDILFKSGASIATALNHGYDVAIEIAKRLQS |
| 3LAD Chain:A ((4-320)) | -----FDVIVIGAGPGGYVAAIKSAQLGLKTALI-EKYKGKEGKTALGGTCLNVGCIPSKALLDSSYKFHEAHESF-KLHGISTGEVAIDVPTMIARKDQIVRNLTGGVASLIKANGVTL-----FEGHGKLLAGKKVEVTAADGSSQVLDTENVILASG-----SKPVEIP-PAPVDQDVIVDSTGALDFQNVPGKLGVIGAGVIGLELGSVWARLGAEVTVLEAMDKFLPAVDEQVAKEAQKILTKQGLKILLGARVTGTEVKNKQVTVKFVDAEGEKSQAFDKLIVAV-GRRPVTTDLLAADSGVTLDERGFIYV--DDYCATSVPGVYAIGDVVRGAMLAHKASEEGVVVAERIAGHKAQM |
|
General information:
TITO was launched using:
| RESULT:
|
Template: 3LAD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
|
3D Compatibility (PKB) -123909 for 2008 contacts (-61.7/contact) +
2D Compatibility (PS) -28941 + (NN) -411 + (LL) 1012
1D Compatibility (HY) -16000 + (ID) 3800
Total energy: -172049.0 ( -85.68 by residue)
QMean score : 0.425
|
|
|