Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDLSYSLERVLQEDPAARNKWEVLLLY-PGIHALLCYRLAHALHKRRFYFIARALSQLARFITGIEIHPGAKIGRGLFIDHGMGVVIGETTEIGDDVTIYHGVTLGGTGKFKGKRHPTLGNRVVVGAGAKVLGAICVGDDVRIGANAVVLSDLPTGSTAVGAKAKTITKDR
1T3D Chain:A ((101-260))
-------IQAVRTRDPAV-DKYSTPLLYLKGFHALQAYRIGHWLWNQGRRALAIFLQNQVSVTFQVDIHPAAKIGRGIMLDHATGIVVGETAVIENDVSILQSVTLGGTGKSGGDRHPKIREGVMIGAGAKILGNIEVGRGAKIGAGSVVLQPVPPHTTAAGVPARIVGKPD
General information:
TITO was launched using:
RESULT:
Template:
1T3D.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -140872 for 1284 contacts (-109.7/contact) +
2D Compatibility (PS) -17078 + (NN) -5900 + (LL) 620
1D Compatibility (HY) -11200 + (ID) 3600
Total energy: -178030.0 ( -138.65 by residue)
QMean score : 0.544
(partial model without unconserved sides chains):
PDB file :
Tito_1T3D.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1T3D-query.scw
PDB file :
Tito_Scwrl_1T3D.pdb
: