Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLVEIENLTKTYGSLKALDNISLKLPKQQFIGLLGPNGAGKTTLLKILAGLNLNYQGE-----VKILNQKIGI-ETKKSVAFLSDGDFLDPKLTPLKAIAF----YKDFFSDFDESKALNLL-------KRFSVPLKREFKALSKGMREKLQLILTLSRNASLYLFDEPVAGIDPIAREEIFELIAKEFSQNASLLVSTHLVVDVEKYLDSAIFLKEAKVVAFGDVGELKKGYSSLEAAYKERLK
4YMU Chain:J ((1-223))
-MIFVNDVYKNFGSLEVLKGVTLKVNKGEVVVIIGPSGSGKSTLLRCINLLEEPTKGEVFIDGVKINNGKVNINKVRQKVGMVFQHFNLFPHLTAIENITLAPVKVKKMNKKEAEELAVDLLAKVGLLDKKDQYPIK-----LSGGQKQRLAIARALAMQPEVMLFDEPTSALDPEMVKEVLNVMKQLANEGMTMVVVTHEMGFAREVGDRVIFMDDGVIVEEGTPEEIFYRAKNERTREFLSKI
General information:
TITO was launched using:
RESULT:
Template:
4YMU.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -105760 for 1607 contacts (-65.8/contact) +
2D Compatibility (PS) -21847 + (NN) -5204 + (LL) 752
1D Compatibility (HY) -17200 + (ID) 3050
Total energy: -152309.0 ( -94.78 by residue)
QMean score : 0.542
(partial model without unconserved sides chains):
PDB file :
Tito_4YMU.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4YMU-query.scw
PDB file :
Tito_Scwrl_4YMU.pdb
: