Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MDSTLKHLAIIMDGNGRWAKLKNKARAYGHKKGVKTLKDITIWCANHKLECLTLYAFSTENWKRPKSEVDFLMKMLKKYLKDERSTYLDNNIRFRAIGDLEGFSKELRDTILRLENDTRYFKDFTQVLALNYGSKNELSRAFKSLLEN------PPNHINNIESLENEISHRLDTHDLPEVDLLLRTGGEMRLSNFLLWQSSYAELFFTPILWPDFTPKDLENIISDFYKRVRKFGELKC
2E9C Chain:A ((19-240))
-----RHVAIIMDGNGRWAKKQGKIRAFGHKAGAKSVRRAVSFAANNGIEALTLYAFSSE-------------------LDSEVKSLHRHNVRLRIIGDTSRFNSRLQERIRKSEALTAGNTGLTLNIAANYGGRWDIVQGVRQLAEKVQQGNLQPDQID-----EEMLNQHVCMHELAPVDLVIRTGGEHRISNFLLWQIAYAELYFTDVLWPDFDEQDFEGALNAFANRE--------
General information:
TITO was launched using:
RESULT:
Template:
2E9C.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -102383 for 1473 contacts (-69.5/contact) +
2D Compatibility (PS) -20811 + (NN) -5588 + (LL) 2772
1D Compatibility (HY) -12800 + (ID) 4400
Total energy: -143210.0 ( -97.22 by residue)
QMean score : 0.429
(partial model without unconserved sides chains):
PDB file :
Tito_2E9C.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2E9C-query.scw
PDB file :
Tito_Scwrl_2E9C.pdb
: