Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKVIVALGVLAFANVLMATDVKALVKG---------CAACHGVKFEKKALGKSKIVNMMSEKEIEEDLMAFKSGANKNP----VMTAQAKKLSDEDIKALAKYIPTLK
1M6Z Chain:A ((90-189))
--------GSVGYADPALAKQGEKLFRGGKLDQGMPACTGCHAPNGVGNDLAGFPKLGGQHAAYTAKQLTDFREGNRTNDGDTMIMRGVAAKLSNKDIEALSSYIQGLH
General information:
TITO was launched using:
RESULT:
Template:
1M6Z.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -26794 for 625 contacts (-42.9/contact) +
2D Compatibility (PS) -9507 + (NN) -2682 + (LL) 1244
1D Compatibility (HY) -3200 + (ID) 1250
Total energy: -42189.0 ( -67.50 by residue)
QMean score : 0.388
(partial model without unconserved sides chains):
PDB file :
Tito_1M6Z.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1M6Z-query.scw
PDB file :
Tito_Scwrl_1M6Z.pdb
: