Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQELYDKHIHDQSERRFILELDGQ--MVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSATKLAMKYAFHVLNMHKLYLVVDKVNEKAIHVYEKVGFIREGELIDEFFVDGTYHDAIRMCIFQHQYREMDI
4NCZ Chain:A ((5-171))
-NSQLTLRALERGDLRFIHNLNNNRNIMSYWFEEPYESFDELEELYNKHIHDNAERRFVVE-DAQKNLIGLVELIEINYIHRSAEFQIIIAPEHQGKGFARTLINRALDYSFTILNLHKIYLHVAVENPKAVHLYEECGFVEEGHLVEEFFINGRYQDVKRMYILQSKY-----
General information:
TITO was launched using:
RESULT:
Template:
4NCZ.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99490 for 1161 contacts (-85.7/contact) +
2D Compatibility (PS) -17673 + (NN) -7162 + (LL) 924
1D Compatibility (HY) -22000 + (ID) 4850
Total energy: -150251.0 ( -129.42 by residue)
QMean score : 0.496
(partial model without unconserved sides chains):
PDB file :
Tito_4NCZ.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NCZ-query.scw
PDB file :
Tito_Scwrl_4NCZ.pdb
: