Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LDIQESVIGIDLGGTKILIGEVTKDGEVLNS--KSYPSNTENQTKATETLLKVLADYTQNIGFIAPKQTGIGVGLVGRVDHKSGVWLEIEPGKSNPTPLAGILEAKTGLPVSLGNDVVCATMAEKQFGWGRETNDFIYLNVGTGLAAGFVVDGRITQGGHFNAGEVGHAVVDIHSDVLCGCGRRGCVERLASGLGIKEEALRHLNSYPTSI-----LAETQTE-LTGKMVLHAAEQKDELAEKIIDNATFQLANLIMNLVRTTDPECVILGGGVTRNEHFFQKIQDNLQSNTIRFVTKGVVRSKLE------KDKVGLIGAAVIGMRLGNEGGKE |
| 3VGL Chain:A ((5-307)) | -------IGVDIGGTKIAAGVVDEEGRILSTFKVATPPTAEGIVDA---ICAAVAGASEGHDVEA-----VGIGAAGYVDDKRATVLFAPNIDWRHEPLKDKVEQRVGLPVVVENDANAAAWGEYRFGAGQGHDDVICITLGTGLGGGIIIGNKLRRGRFGVAAEFGHIRV-VPDGLLCGCGSQGCWEQYASGRALVRYAKQRANATPENAAVLLGLGDGSVDGIEGKHISEAARQGDPVAVDSFRELARWAGAGLADLASLFDPSAFIVGGGVSDEGEL---VLDPIRKSFRRWLIGGEWRPHAQVLAAQLGGKAGLVGAA------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3VGL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -176610 for 2611 contacts (-67.6/contact) +
2D Compatibility (PS) -31205 + (NN) -17574 + (LL) 1448
1D Compatibility (HY) -10800 + (ID) 4550
Total energy: -239291.0 ( -91.65 by residue)
QMean score : 0.458
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