Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKTTQMNSEIFQINLEKTLKEIMVAKGLQSDEIRFVIVPVEEKGKMLDGSD-------EMMKRLVLTKENIGNKQLVLKDVVDVLGGLFPKAPIWINVSFLEMNGEKAIFKLETSLRFRKPTLLRNAETGHAPFKAIT |
2OPC Chain:A ((53-124)) | -----------------------------QAEELHFCVHIAHSSGPKLNRARSLGTVNSNMDQHWAQAQRNSGATRRTIEG-FHLFENDIPNFPDYIKIKLV------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2OPC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2435 for 292 contacts (8.3/contact) +
2D Compatibility (PS) -6613 + (NN) 3544 + (LL) 5704
1D Compatibility (HY) -2400 + (ID) 550
Total energy: 2120.0 ( 7.26 by residue)
QMean score : 0.045
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