Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKKLKQLTNQLFTSTIFLVTMLFIIPPTFAIADGSKVSFYEYIYGAPLRWLTVISTTEKKGAFLEMFFSENEGINIQWLNLIINFLLVFLVITIIFSLAKKFYNKKNA
2LOT Chain:A ((37-56))
--------------------------------------------------------------------------LVFLLGTTGNGLVLWTVFRK--------------
General information:
TITO was launched using:
RESULT:
Template:
2LOT.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5902 for 73 contacts (-80.8/contact) +
2D Compatibility (PS) -1904 + (NN) 464 + (LL) 7368
1D Compatibility (HY) -1200 + (ID) 200
Total energy: -1374.0 ( -18.82 by residue)
QMean score : 0.218
(partial model without unconserved sides chains):
PDB file :
Tito_2LOT.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2LOT-query.scw
PDB file :
Tito_Scwrl_2LOT.pdb
: