Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDED-------AIILKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAALMEEIKRRFGDTL
3R31 Chain:A ((256-315))
------------------------TMELGGKSPMIVFDDADIESAVGGAMLGNFYSSGQVC------SNGTRVFV------QKKAKARFLENLKRR-----
General information:
TITO was launched using:
RESULT:
Template:
3R31.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 4392 for 269 contacts (16.3/contact) +
2D Compatibility (PS) -5789 + (NN) -1946 + (LL) 2748
1D Compatibility (HY) -4400 + (ID) 1100
Total energy: -6095.0 ( -22.66 by residue)
QMean score : 0.225
(partial model without unconserved sides chains):
PDB file :
Tito_3R31.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3R31-query.scw
PDB file :
Tito_Scwrl_3R31.pdb
: