Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | LIMNANLEVNAELVKESYVYLLSRYLVLRQENFDTKEDKIPYNTLKHNSVSPADANFVNPNFDVVYSEAWIAVDDEHAVVLEVPEI-KNRYYTVQLLDGWGEVVTNINERNFPEHPHGKFAFVKKGTNPSIPSDAI-KIELPSEKVKVLLRVEQKD--DPEGAVKLQKAFKFDAPDNIKIKEPLEIP--HFTNAEFLLEEIYSNLEELLATYPDKMPKAAEFQDKARKVAAYIEL-GDDQKAEVRNLIVKEALPYFTNGAKGFG-TQKGGWSVTYVAGA---FENDILARAIINY---GGIWANSIQEALYFIGQKGTDDELLTGDKI-YKIHFSADELPAELANAFWSVTLYSVPDYHVIPNELNKFCINNYTGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAGKEFSLNFRLYVPKKEVLEGKVFLPPLEVF |
| 3U07 Chain:A ((30-433)) | -------------AEDAYIYGYSIDEAYKFFYHTAVENNYPLNEFQ-----------PTINNDTLHLMGWLDVAAE-PVIVSVPDMDEGRYWILHTMDMGHYTNAAFSSRTRG-TKGGQFMFAAQDWQGEVPASVDEVVRVDSNLVKLMGRIMAVNDEDAKVALNYMDQWNIRTLSEYLGKNGPKPVQRTYP--DPKKSTWLERVNFVLCDGSMGNADK-QWLDKYQSIGVEPCKTDF-TPE-QLKLAKV-GEKKGMEHLVELAPKMTDARTL---LGTRDTLGD--APRDIFAEGTYLGQWGLPPIEASYRKSDFDSIGQKLDGSKHDYVMRFKA---PNV--SEFWSVTIYGNDNRLMAKNDLNRHSRGDRT-MKADKDGYYTIYMSANEKGRADDPNFLPVPEK-PFYAIMRFYGADDAIQSGEYQMPEIKV- |
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General information:
TITO was launched using:
| RESULT:
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Template: 3U07.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 41131 for 2648 contacts (15.5/contact) +
2D Compatibility (PS) -37204 + (NN) -10218 + (LL) 2840
1D Compatibility (HY) 14000 + (ID) 1300
Total energy: 9249.0 ( 3.49 by residue)
QMean score : 0.101
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