Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLDKSVPHISVIMVNHDATNYPEFHLPAGYSFCFYKDGLEEDWCRLQLETGQVLSMDSIRARFETEFGNEKEKLTKRCIFVKAPNGEIIGTAMLWDGNTFGKIESRI-HWVAVLDSHGGKGIAKALLSKILGLNK--SKFVYLT-TQTGSYQAIYLYRKFGFEKYVGKTPENWKTVNFQEEKETAWQIIENKIAEHQA
3DR8 Chain:A ((47-139))
---------------------------------------------------------------------EARQLLGYPVLVSEENGVVTGYASFGDWRSFDGFRYTVEHSVYVHPAHQGKGLGRKLLSRLIDEARRCGKHVMVAGIESQNAASIRLHHSLGF------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
3DR8.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -44089 for 550 contacts (-80.2/contact) +
2D Compatibility (PS) -10088 + (NN) -6413 + (LL) 7428
1D Compatibility (HY) -4800 + (ID) 1250
Total energy: -59212.0 ( -107.66 by residue)
QMean score : 0.446
(partial model without unconserved sides chains):
PDB file :
Tito_3DR8.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3DR8-query.scw
PDB file :
Tito_Scwrl_3DR8.pdb
: