Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAKAFLSIGTNIGERLENLNDALRGLAASNQINITNVSSVYETDAVGYEDQAAFLNIAVEIETDFPPIDLLDFCLALELELGRVRLF-KWGPRLIDIDVLLYDDVKTDTEKLKIPHPYMKERAFVMIPLIEISPEKSNLVENPALLEEQGVRKIKNQVNW
4M5K Chain:A ((4-138))
MTVAYIAIGSNLASPLEQVNAALKALGDIPESHILTVSSFYRTPPLGPQDQPDYLNAAVALETSLAPEELLNHTQRIELQQGRVRKAERWGPRTLDLDIMLFGNEVINTERLTVPHYDMKNRGFMLWPLFEIAPE-------------------------
General information:
TITO was launched using:
RESULT:
Template:
4M5K.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -97761 for 1019 contacts (-95.9/contact) +
2D Compatibility (PS) -14307 + (NN) -5562 + (LL) 1792
1D Compatibility (HY) -11200 + (ID) 2850
Total energy: -129888.0 ( -127.47 by residue)
QMean score : 0.452
(partial model without unconserved sides chains):
PDB file :
Tito_4M5K.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4M5K-query.scw
PDB file :
Tito_Scwrl_4M5K.pdb
: