Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKKSRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIGKSTLLLQVSAQLTLTNKKVLYI------SGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQETIDFVKPD------FVVIDSIQTVYHSDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVG--HVTKEGAIAGP---RLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEVANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKVSLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCFIGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEALKKALPD |
| 2CVF Chain:A ((2-219)) | -----------------------------------------------------------------------LSTGTKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTG---LLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAE-ENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKLPKPGLRVAVLERHRFRPEGLMAYFRITERGIEDV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2CVF.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -112346 for 1501 contacts (-74.8/contact) +
2D Compatibility (PS) -21710 + (NN) -4011 + (LL) 18124
1D Compatibility (HY) -12000 + (ID) 2450
Total energy: -134393.0 ( -89.54 by residue)
QMean score : 0.347
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