Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVLTLAKERKIQVQFVPKQKIEKVVSGAHQGVAAQVAAY-QYAELDDLFAAAEAKDEMPFFIILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLT-QTVAKASTGAMEYVPVVRVTNMVRTMEELQKRGLWIFGTDAKGSSDYRTM-DVDMPLAIVIGSEGFGMSRLVREKCDFLVHLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK
3NK6 Chain:A ((39-269))
--------------PLMECIRAGVQFIEVYGSSGTP--LDPALLDLCRQREIPVRLIDVSIVNQLF-----AKVFGIARVPRPARLADI---AERGGDV---VVLDGVKIVGNIGAIVRTSLALGAAGIVLVDSDLATIADRRLLRASRGYVFSLPVV-LADREEAVSFLRDNDIALMVLDTDGDLGVKDLGDRADRMALVFGSEKGGPSGLFQEASAGTVSIPMLSSTESLNVSVSVGIALHERSARNFAVRR
General information:
TITO was launched using:
RESULT:
Template:
3NK6.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -162742 for 1773 contacts (-91.8/contact) +
2D Compatibility (PS) -24550 + (NN) -10140 + (LL) 1464
1D Compatibility (HY) -16800 + (ID) 2850
Total energy: -215618.0 ( -121.61 by residue)
QMean score : 0.517
(partial model without unconserved sides chains):
PDB file :
Tito_3NK6.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NK6-query.scw
PDB file :
Tito_Scwrl_3NK6.pdb
: