Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAIKSISKSELEVMKIIWDFGRAVQYADVAGKLEE-KNYSWKKNTVLTFLTRLVEKNLLSVKKVGRKNEYY--ALVSENEYLERQTETFVEEIYEGDVKGLITNLVQNDLISPDELEDLQQFWKRMKSPNE
1SD4 Chain:A ((8-119))
-----ISMAEWDVMNIIWD-KKSVSANEIVVEIQKYKEVSDK--TIRTLITRLYKKEI--IKRYKSENIYFYSSNIKEDDIKMKTAKTFLNKLYGGDMKSLVLNFAKNEELNNKEIEELRDI---------
General information:
TITO was launched using:
RESULT:
Template:
1SD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -60762 for 649 contacts (-93.6/contact) +
2D Compatibility (PS) -11495 + (NN) -693 + (LL) 1304
1D Compatibility (HY) -11200 + (ID) 1750
Total energy: -84596.0 ( -130.35 by residue)
QMean score : 0.690
(partial model without unconserved sides chains):
PDB file :
Tito_1SD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD4-query.scw
PDB file :
Tito_Scwrl_1SD4.pdb
: