Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LITHVIWDMGETLNTVPNTRYDHYPLDTYPEVVLRKDAKETLEKVKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIFDFTLNELQIDKTEAVMVGNTFESDIIGANRAGIHA-IWLQNPEVCLQDERQPLVAPPFVIPVWDLADVPEALLLLKKISS
2W4M Chain:A ((124-262))
-----------------STRLQH--------MTLAEDVKAMLTELR----KEVRLLLLTNGDRQTQREKIEACACQSYFDAVVVGGEQ----REEKPAPSIFYYCCNLLGVQPGDCVMVGDTLETDIQGGLNAGLKATVWINKNGIV------PLKSSP--VPHYMVSSVLELPALLQSI--
General information:
TITO was launched using:
RESULT:
Template:
2W4M.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36170 for 990 contacts (-36.5/contact) +
2D Compatibility (PS) -14610 + (NN) -9933 + (LL) 2556
1D Compatibility (HY) -10000 + (ID) 2100
Total energy: -70257.0 ( -70.97 by residue)
QMean score : 0.440
(partial model without unconserved sides chains):
PDB file :
Tito_2W4M.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2W4M-query.scw
PDB file :
Tito_Scwrl_2W4M.pdb
: