Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
VFIHGFQEEVGNLWQETLRHPFVRSLADGTLEKEAFYYYLLQDDYYLSHFEK---VIEKSVEQAGTAELAAEMR-EVQVRLQQSELLMREQFYPRVGLTERDFSERKPAPTAYHYTSHLHRMVDFGSFGVTIAALLPCYALYADIGKMYEGARSSEP--FYQELLDSYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWRGSVNYV
1UDD Chain:A ((16-215))
------------IWKKIFEHPFVVQLYSGTLPLEKFKFYVLQDFNYLVGLTRALAVISSKAEYPLMAELIELARDEVTVEVENYVKLLKE-----LDLTLEDAIKTEPTLVNSAYMDFMLATAYKGNIIEGLTALLPCFWSYAEIAEYHKDKLRDNPIKIYREWGKVYLSNEYLNLVGRLRKIIDSSGHSGYDR----LRRIFITGSKFELAFWEMA-----WRGG----
General information:
TITO was launched using:
RESULT:
Template:
1UDD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -99429 for 1439 contacts (-69.1/contact) +
2D Compatibility (PS) -21148 + (NN) -12095 + (LL) 2360
1D Compatibility (HY) -14400 + (ID) 2950
Total energy: -147662.0 ( -102.61 by residue)
QMean score : 0.607
(partial model without unconserved sides chains):
PDB file :
Tito_1UDD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1UDD-query.scw
PDB file :
Tito_Scwrl_1UDD.pdb
: