Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLRKNDFIYVTGGNTFFLLQELKRTGADKLILEEIAAGKLYIGESAGAVITSPNIAYIQTMDSTKKAVNLTNYDALNLVDFSTLPHYNNTPFKEITQKIVTEYAGKSQIYPISNHEAIFIRGKEVITKRLS
2NV0 Chain:A ((2-105))
--------------------------LTIGVLGLQGA-------VREHIHAIEACGAAGLVVKR--------PEQLNEVDGLILPGGESTTMRRLIDTYQFMEPLREFAAQGKPMFGTCAGLIILAKEIA-----------------PHLGLLNVVVE-----------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2NV0.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -47102 for 763 contacts (-61.7/contact) +
2D Compatibility (PS) -10992 + (NN) -5667 + (LL) 7652
1D Compatibility (HY) -4000 + (ID) 1050
Total energy: -61159.0 ( -80.16 by residue)
QMean score : 0.536
(partial model without unconserved sides chains):
PDB file :
Tito_2NV0.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2NV0-query.scw
PDB file :
Tito_Scwrl_2NV0.pdb
: