Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVAIISQDGKVIREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKED-NSPDQVGVKMGWKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN
2XNA Chain:A ((87-154))
------------------------------------------------------------------YLCAGAGSQGNLIFGKGTKLSVKPNIQNPDPAVYQLR-DSKSSDKSVCL----FTDFDSQTNVSQSKDSDVYI--
General information:
TITO was launched using:
RESULT:
Template:
2XNA.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -2573 for 259 contacts (-9.9/contact) +
2D Compatibility (PS) -6940 + (NN) -693 + (LL) 5804
1D Compatibility (HY) -4400 + (ID) 1000
Total energy: -9802.0 ( -37.85 by residue)
QMean score : 0.343
(partial model without unconserved sides chains):
PDB file :
Tito_2XNA.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2XNA-query.scw
PDB file :
Tito_Scwrl_2XNA.pdb
: