Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MAHENLRELEDQLIELRQTYQEVISETREFEDPQLQNGPINAAEVRLSALRHEIAEVEKKIKKAESKTE
3NMD Chain:A ((20-68))
-----------SLRDLQYALQEKIEELRQRDAL------IDELELELDQKDELIQMLQNELDKYRS---
General information:
TITO was launched using:
RESULT:
Template:
3NMD.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) 6448 for 186 contacts (34.7/contact) +
2D Compatibility (PS) -5549 + (NN) -3060 + (LL) 1248
1D Compatibility (HY) -2400 + (ID) 650
Total energy: -3963.0 ( -21.31 by residue)
QMean score : 0.348
(partial model without unconserved sides chains):
PDB file :
Tito_3NMD.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3NMD-query.scw
PDB file :
Tito_Scwrl_3NMD.pdb
: