Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MLEGEIPEKYRSVDEEEINRSF----GGSLPAVHAVVKSYLQIIWVTKWTE
1SD4 Chain:A ((22-58))
---------KKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEII-----
General information:
TITO was launched using:
RESULT:
Template:
1SD4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -10344 for 159 contacts (-65.1/contact) +
2D Compatibility (PS) -3265 + (NN) 867 + (LL) 1080
1D Compatibility (HY) -2400 + (ID) 250
Total energy: -14312.0 ( -90.01 by residue)
QMean score : 0.261
(partial model without unconserved sides chains):
PDB file :
Tito_1SD4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1SD4-query.scw
PDB file :
Tito_Scwrl_1SD4.pdb
: