Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFDDSKPIYKQIVHYIHTEIVTGTYEAGDKLLSVRELATKLEVNPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLGINKEKIIAWVKKVEEVEVNVSGK
4U0V Chain:A ((13-101))
-------PIYYQIMEQLKTQIKNGELQPDMPLPSEREYAEQFGISRMTVRQALSNLVNEGLLYRLKGRGTFVS--KPKMEQ-----ALQGLTSFTEDMKSRGM----------------------
General information:
TITO was launched using:
RESULT:
Template:
4U0V.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -36684 for 522 contacts (-70.3/contact) +
2D Compatibility (PS) -9234 + (NN) 606 + (LL) 2688
1D Compatibility (HY) -6800 + (ID) 1350
Total energy: -50774.0 ( -97.27 by residue)
QMean score : 0.509
(partial model without unconserved sides chains):
PDB file :
Tito_4U0V.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4U0V-query.scw
PDB file :
Tito_Scwrl_4U0V.pdb
: