Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | VNKFMELLGEKLMPLAAKLGENRYLTTLRDAFMLAFPLTMFGSIAVVLMNLPFWSDETKAVLQLYLGNAQSATMSIMTVFVVFGIGYSLSKYYKVEAIYGGAVALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMITGFIAAELYRFFVQRDWTIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFHTNLHDVVYTVIQKPLVGLGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLMLENLDAYKAGLPLPHIITKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLALGPGIFNVNEPVLFGMPIVLNATILIPWIIAPLIVTTLNYFVMAAGIVPAPTGVAVPWTVPIVINGILATNSWLGGALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK |
1LBJ Chain:A ((1-17)) | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVPIFTYGELQRMQEKE----- |
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General information:
TITO was launched using:
| RESULT:
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Template: 1LBJ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) 2370 for 70 contacts (33.9/contact) +
2D Compatibility (PS) -1716 + (NN) 193 + (LL) 34640
1D Compatibility (HY) -2000 + (ID) 50
Total energy: 33437.0 ( 477.67 by residue)
QMean score : 0.063
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