Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAKGEYQKVSYPLLKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSFPFWRRVHDSFIED
3V7Y Chain:A ((1-263))
MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGGDGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEADKLVKLLAK--YQKVSYPLLKTTVKYGI---EATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGTTAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQISVDHLSILHRDVQEIRYEVSAKKIHFARFRSFPFWRRVHDSFIE-
General information:
TITO was launched using:
RESULT:
Template:
3V7Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -145394 for 2095 contacts (-69.4/contact) +
2D Compatibility (PS) -27403 + (NN) -8498 + (LL) -188
1D Compatibility (HY) -38800 + (ID) 12900
Total energy: -233183.0 ( -111.30 by residue)
QMean score : 0.489
(partial model without unconserved sides chains):
PDB file :
Tito_3V7Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3V7Y-query.scw
PDB file :
Tito_Scwrl_3V7Y.pdb
: