Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDRAKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKAGKLSGLAHCIAFANKDFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVENYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEERAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF
4NZ9 Chain:A ((25-278))
--LNLENKTYVIMGIANKRSIAFGVAKVLDQLGAKLVFTYRKERSRKELEKLLEQLNQPEAH--LYQIDVQSDEEVINGFEQIGKDVGNIDGVYHSIAFANMEDLRGRFSETSREGFLLAQDISSYSLTIVAHEAKKL--MPEGGSIVATTYLGGEFAVQNYNVMGVAKASLEANVKYLALDLGPDNIRVNAISAGPIRTLSAKGVGGFNTILKEIEERAPLKRNVDQVEVGKTAAYLLSDLSSGVTGENIHVDSGFHAI--
General information:
TITO was launched using:
RESULT:
Template:
4NZ9.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -180503 for 2187 contacts (-82.5/contact) +
2D Compatibility (PS) -27569 + (NN) -7781 + (LL) 436
1D Compatibility (HY) -24800 + (ID) 6900
Total energy: -247117.0 ( -112.99 by residue)
QMean score : 0.587
(partial model without unconserved sides chains):
PDB file :
Tito_4NZ9.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4NZ9-query.scw
PDB file :
Tito_Scwrl_4NZ9.pdb
: