Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNIVMGIDEPTEKISVKKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIHWKLYELEEKFKDSSFFRCSKSMILNIEWIEKIAPGFHGKFEAKLFNREKVIISRQYAKVLKQKLNMGGKRK
2V1N Chain:A ((30-84))
------------------------------------------LLRRRFGTKRVH-NNIVYNEYISHREHIHMNA---TQWETLTDFTKWLGREGLCKVDET--------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
2V1N.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -5745 for 280 contacts (-20.5/contact) +
2D Compatibility (PS) -5736 + (NN) -156 + (LL) 7272
1D Compatibility (HY) -1600 + (ID) 250
Total energy: -6215.0 ( -22.20 by residue)
QMean score : 0.228
(partial model without unconserved sides chains):
PDB file :
Tito_2V1N.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-2V1N-query.scw
PDB file :
Tito_Scwrl_2V1N.pdb
: