Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software)
Input alignment information:
Query sequence | MSKIVFFDVDGTLVGETKEIPASAKQAIAKLKENGVYVAIATGRGPFMLDEIRKELDINSY----ICYNGQYVI-FEGKEI-YAKPLPTESLERLITVA-SEHEHPIVFSGKDSMRAN-LPDHDRVTIGMNSIK-REYPKVDANYYKGRDIYQCLLFCDESYDAYYREEF-----KQYGFLRWHDVSVDVCPADGSKAEGIKQMIKKLGFSMKDTYAFGDGLNDIAMLQTVGTGVAMGNGRDEVKAVADYVTSHVDDDGVYNALKQLKLI |
4DW8 Chain:A ((6-268)) | --KLIVLDLDGTLTNSKKEISSRNRETLIRIQEQGIRLVLASGRPTYGIVPLANELRMNEFGGFILSYNGGEIINWESKEMMYENVLPNEVVPVLYECARTNHLSILTYDGAEIVTENSLDPYVQKEAFLNKMAIRETNDFLTDIT--LPVAKCLIVGDAGKLIPVESELCIRLQGKINVFRSEPYFLELVPQGIDKALSLSVLLENIGMTREEVIAIGDGYNDLSMIKFAGMGVAMGNAQEPVKKAADYITLTNDEDGVAEAIERI--- |
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General information:
TITO was launched using:
| RESULT:
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Template: 4DW8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -139090 for 2114 contacts (-65.8/contact) +
2D Compatibility (PS) -27607 + (NN) -14114 + (LL) 516
1D Compatibility (HY) -20400 + (ID) 3550
Total energy: -204245.0 ( -96.62 by residue)
QMean score : 0.485
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