Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLETVEVLDVLSDYYTAHEKQKQPPKETTSPSKSNGEHKEIKQAIRYIKKNIHRSITLEEVANHVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRASYFCKVFKKEFKMTPKEYRDSLK
1D5Y Chain:A ((5-108))
---------------------------------------------------------------------------------IRDLLIWLEGHLDQPLSLDNVAAKAGYSKWHLQRMFKDVTGHAIGAYIRARRLSKSAVALRLTARPILDIALQYRFDSQQTFTRAFKKQFAQTPALYRRS--
General information:
TITO was launched using:
RESULT:
Template:
1D5Y.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -45967 for 652 contacts (-70.5/contact) +
2D Compatibility (PS) -10488 + (NN) -3208 + (LL) 5192
1D Compatibility (HY) -5200 + (ID) 1150
Total energy: -60821.0 ( -93.28 by residue)
QMean score : 0.582
(partial model without unconserved sides chains):
PDB file :
Tito_1D5Y.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D5Y-query.scw
PDB file :
Tito_Scwrl_1D5Y.pdb
: