Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MQNPTKEEIQHILKKAKVIAVVGLSDKPDRTSYRVSQIMQQAGYKIIPVNPNADEILGEKTVKHLTDIEEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQLGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD
1Y81 Chain:A ((14-127))
---------------FRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIEGLKCYRSVRELPKDVDVIVFVVPPKVGLQVAKEAVEAGFKKLWFQPGAESEEIRRFLEKAGVEYSFGRCIMV------
General information:
TITO was launched using:
RESULT:
Template:
1Y81.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -91447 for 885 contacts (-103.3/contact) +
2D Compatibility (PS) -12645 + (NN) -3944 + (LL) 1900
1D Compatibility (HY) -6000 + (ID) 1500
Total energy: -113636.0 ( -128.40 by residue)
QMean score : 0.593
(partial model without unconserved sides chains):
PDB file :
Tito_1Y81.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1Y81-query.scw
PDB file :
Tito_Scwrl_1Y81.pdb
: