Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKDLTPDDEVTVISREL--KQRRDSLAEFDKAGRSDLSDKVRSEIVIVEDYAPKQLT-PEELENIVKATIEEVG-------ASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS
3IP4 Chain:B ((363-473))
-------------------------------------------KLTPENLAGMIKLIEDGTMSSKIAKKVFPE----LAAKGGNAKQIMEDNGLVQISDEATLLKFVNEALDNNEQSVEDYKNGKGKAMGFLVGQIMKASKGQANPQLVNQLLKQELD
General information:
TITO was launched using:
RESULT:
Template:
3IP4.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -8984 for 664 contacts (-13.5/contact) +
2D Compatibility (PS) -10377 + (NN) -1801 + (LL) 3980
1D Compatibility (HY) -4400 + (ID) 1150
Total energy: -22732.0 ( -34.23 by residue)
QMean score : 0.448
(partial model without unconserved sides chains):
PDB file :
Tito_3IP4.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-3IP4-query.scw
PDB file :
Tito_Scwrl_3IP4.pdb
: