Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
LYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRLE-GTEAQVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIESEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAVLALEALGYSTRELKKVIPKLAKEADLTSDAYIKLALQLMTK
1D8L Chain:A ((5-132))
----LRGIIIEKQPPLVLIEVGGVGYEVHMPMTCFYELPEAGQEAIVFTHFVVREDAQLLYGFNNKQERTLFKELIKTNGVGPKLALAILSGMSAQQFVNAVEREEVGALVKLPGIGKKTAERLIVEMKDRF----------------------------------------------------------------------
General information:
TITO was launched using:
RESULT:
Template:
1D8L.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -86217 for 906 contacts (-95.2/contact) +
2D Compatibility (PS) -13997 + (NN) -6461 + (LL) 6800
1D Compatibility (HY) -9600 + (ID) 2300
Total energy: -111775.0 ( -123.37 by residue)
QMean score : 0.505
(partial model without unconserved sides chains):
PDB file :
Tito_1D8L.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-1D8L-query.scw
PDB file :
Tito_Scwrl_1D8L.pdb
: