Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
Query sequence
MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLRNLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFL---LPAAQTTDKNAVSGEQMVDLINQLRPDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLLEKEDIEPP-KLIINRIRTQMMMNGDVMDIDEITTHLS-------IELLGIIIDDDEVIRSSNSGDPVAML-PNNRASQGYRNIARRILGESIPLMSIETKKAG-FFARLKQLFSGK
4RZ2 Chain:A ((33-292))
----IAVTSGKGGVGKSNVSLNFSLSLSKLGFRVLLLDMDIGMGNIDILLGESSSLA--LADWFSARLPLSE-LVKSGP-EHLSYIAGGTGAAQWQGLDTASIDRFLTELQAVASQYDYLIFDMGAGASGERLYFLKSVDDVFVVTTPEPTAMTDAYAMMKYMHAAGSEAPFSVIVNRAGKER----EGYEVFERLKHVTGRFLNKDIALLGIIPEDRTVARAVVSQTPFVLLDPAAKASKAVRQMAFRY----AP----------RFFAKLRQLF---
General information:
TITO was launched using:
RESULT:
Template:
4RZ2.pdb
Alignment :
align.pir
Tito was launched with SMD and SCWRL
Tito text output
3D Compatibility (PKB) -152075 for 1959 contacts (-77.6/contact) +
2D Compatibility (PS) -25610 + (NN) -6236 + (LL) 1500
1D Compatibility (HY) -19600 + (ID) 4050
Total energy: -206071.0 ( -105.19 by residue)
QMean score : 0.451
(partial model without unconserved sides chains):
PDB file :
Tito_4RZ2.pdb
:
(Unconserved sides chains are recalculated) :
Sequence:
align-4RZ2-query.scw
PDB file :
Tito_Scwrl_4RZ2.pdb
: