Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)
Input alignment information:
| Query sequence | MFGFGNKDIGIDLGTANTLV-YMKGKGIVLRE--------PSVVAMKKDTQEIVAVGSDAKNMIGRTPGNI--------------------VAIRPMK-------DGVI-------ADYDTTAAMMKYYIQKAGKSVNASKPRVMICVPSGITGVEKRAVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVV-DIGGGTTEVAVISLGGI---------VTSRSVRTAGDDLDEVIINYIRKKYNLLIG-------------DRTAEAIKMEIGSASPKGLDLSPFSIRGRDLVTGLPK--TIEITPEEISEALADTVAAIIDAVKGTLENTPPELSADIMDKGIVLTGGGALLRNLDTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKRKKMN |
| 2KHO Chain:A ((5-349)) | --------IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLV--GQPAKRQAVTNPQNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADA----TG-PKHMNIKVTRAKLESLVEDLVNRSIEPLKVALQDAGLSVS-DIDD--VILVGG-------------QTRMPMV----------------------------- |
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General information:
TITO was launched using:
| RESULT:
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Template: 2KHO.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
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3D Compatibility (PKB) -96684 for 1955 contacts (-49.5/contact) +
2D Compatibility (PS) -30323 + (NN) -14068 + (LL) 3844
1D Compatibility (HY) -14800 + (ID) 4600
Total energy: -156631.0 ( -80.12 by residue)
QMean score : 0.372
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